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Remote template detection, single-template and multi-template threading, totally different from and much better than the old program RAPTOR designed by the same group: Webserver with job manager, automatically updated fold library HHpred: Template detection, alignment, 3D modeling: Interactive webserver with help facility Phyre and Phyre2
Glossary. v. t. e. AlphaFold is an artificial intelligence (AI) program developed by DeepMind, a subsidiary of Alphabet, which performs predictions of protein structure. [ 1] The program is designed as a deep learning system. [ 2] AlphaFold software has had three major versions. A team of researchers that used AlphaFold 1 (2018) placed first in ...
RAPTOR (software) is an integer programming based protein threading software. It has been replaced by a new protein threading program RaptorX / software for protein modeling and analysis, which employs probabilistic graphical models and statistical inference to both single template and multi-template based protein threading.
PknotsRG. A dynamic programming algorithm for the prediction of a restricted class (H-type) of RNA pseudoknots. Yes. sourcecode, webserver. [20] RNA123. Secondary structure prediction via thermodynamic-based folding algorithms and novel structure-based sequence alignment specific for RNA. Yes. webserver.
Moodle – Free and open-source learning management system. OLAT – Web-based Learning Content Management System. Omeka – Content management system for online digital collections. openSIS – Web-based Student Information and School Management system. Sakai Project – Web-based learning management system.
Homology model of the DHRS7B protein created with Swiss-model and rendered with PyMOL. Homology modeling, also known as comparative modeling of protein, refers to constructing an atomic-resolution model of the "target" protein from its amino acid sequence and an experimental three-dimensional structure of a related homologous protein (the "template").
Download Desktop Gold. AOL Desktop Gold is included at no additional cost with your membership. 2. Under 'All Products' scroll to 'AOL Desktop Gold'. If you have an AOL Desktop Gold trial or subscription. Using the link in the Official AOL signup confirmation email you received. 1.
Comparison of software for molecular mechanics modeling. This is a list of computer programs that are predominantly used for molecular mechanics calculations. GPU – GPU accelerated. I – Has interface. Imp – Implicit water. MC – Monte Carlo. MD – Molecular dynamics. Min – Optimization. QM – Quantum mechanics.